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optical-trap-forces/Python/functions.py

142 lines
3.9 KiB
Python

import numpy as np
from scipy import special
from scipy import integrate
from scipy import constants
n1 = 1.3337 # index of refraction of the immersion medium
n2 = 1.4607 # index of refraction of the fused silica at wavelength 523 nm
NA = 1.25 # numerical aperture
f = 2.0e-3 # objective lens focus or WD
Rsp = 1.03e-6 # sphere radius
P = 51.7e-3 # power of the laser
ratio = 1.0 # the ratio of the beam radius to the aperture radius
th_max = np.arcsin(NA / n1) # maximum angle of incidence
# radius of a Gaussian beam (1:1 with input aperture condition)
r_max = f * np.tan(th_max)
n = n2 / n1 # n2/n1
w0 = ratio * r_max # beam radius
F0 = n1 * P / constants.speed_of_light; # resulting force
# Angle of refraction
def theta_r(th):
return np.arcsin(n1 / n2 * np.sin(th))
# Fresnel reflectivity
def reflectivity(th, psi):
theta = theta_r(th)
return (np.tan(th - theta) ** 2 / np.tan(th + theta) ** 2) * np.cos(psi) ** 2 + \
(np.sin(th - theta) ** 2 / np.sin(th + theta) ** 2) * np.sin(psi) ** 2
# Fresnel transparency
def transparency(th, psi):
return 1 - reflectivity(th, psi)
# force factors
def q_s(th, psi):
R = reflectivity(th, psi)
T = transparency(th, psi)
theta = theta_r(th)
return 1 + R * np.cos(2 * th) - T ** 2 * \
(np.cos(2 * th - 2 * theta) + R * np.cos(2*th)) / \
(1 + R ** 2 + 2 * R * np.cos(2*theta))
def q_g(th, psi):
R = reflectivity(th, psi)
T = transparency(th, psi)
theta = theta_r(th)
return R * np.sin(2 * th) - T ** 2 * \
(np.sin(2 * th - 2 * theta) + R * np.sin(2 * th)) / \
(1 + R ** 2 + 2 * R * np.cos(2 * theta))
def q_mag(th, psi):
return np.sqrt(q_s(th, psi) ** 2 + q_g(th, psi) ** 2)
# Average factors (circular polarization)
def q_s_avg(th):
return 0.5 * (q_s(th, 0) + q_s(th, np.pi/2))
def q_g_avg(th):
return 0.5 * (q_g(th, 0) + q_g(th, np.pi/2))
def q_mag_avg(th):
return np.sqrt(q_s_avg(th) ** 2 + q_g_avg(th) ** 2)
# Angles
def phi_i(r):
return np.arctan(r / f)
def gamma(beta, r):
return np.arccos(np.cos(np.pi / 2 - phi_i(r)) * np.cos(beta), dtype=np.cfloat)
def th_i_z(r, z):
return np.arcsin(z / Rsp * np.sin(phi_i(r)), dtype=np.cfloat)
def th_i_y(beta, r, y):
return np.arcsin(y / Rsp * np.sin(gamma(beta, r)), dtype=np.cfloat)
def q_g_z(r, z):
return -q_g_avg(th_i_z(r, z)) * np.sin(phi_i(r))
def q_s_z(r, z):
return q_s_avg(th_i_z(r, z)) * np.cos(phi_i(r))
def q_g_y(beta, r, y):
return q_g_avg(th_i_y(beta, r, y)) * np.cos(phi_i(r), dtype=np.cfloat)
def q_s_y(beta, r, y):
return q_s_avg(th_i_y(beta, r, y)) * np.sin(gamma(beta, r), dtype=np.cfloat)
# Intensity distributions
def gauss(r):
# the fraction of power that falls on the pupil of the micro lens
A = (1 - np.exp(-2*r_max ** 2 / w0 ** 2))
return 2 * A * np.exp(-2 * r ** 2 / w0 ** 2)
def bessel(r):
ring_radius = 2.405; # radius of the first ring of the besselj_0
# the fraction of power that falls on the pupil of the micro lens
A = ring_radius / (w0 * r_max * np.exp(0.5)) * 2 * np.pi * \
integrate.quad(lambda r: r * special.jv(0, ring_radius / w0 * r) ** 2,
0, r_max, epsabs=1e-12, epsrel=1e-6)[0]
return 2 * A* special.jv(0, ring_radius / w0 * r) ** 2
def uniform(r):
return np.ones(r.shape)
def test():
print("q_s = ", q_s(np.pi / 4, np.pi / 4))
print("q_g = ", q_g(np.pi / 4, np.pi / 4))
print("q_mag = ", q_mag(np.pi / 4, np.pi / 4))
print("q_s_avg = ", q_s_avg(np.pi / 4))
print("q_g_avg = ", q_g_avg(np.pi / 4))
print("q_mag_avg = ", q_mag_avg(np.pi / 4))
print("phi_i = ", phi_i(Rsp))
print("gamma = ", gamma(np.pi / 4, Rsp))
print("th_i_z = ", th_i_z(Rsp, Rsp))
print("th_i_y = ", th_i_y(np.pi / 4, Rsp, Rsp))
print("q_g_z = ", q_g_z(Rsp, Rsp))
print("q_s_z = ", q_s_z(Rsp, Rsp))
print("q_g_y = ", q_g_y(np.pi / 4, Rsp, Rsp))
print("q_s_y = ", q_s_y(np.pi / 4, Rsp, Rsp))